Customizations

Tip

Check out the PUN environment for an overview of how environment variables can be added.

Disabling applications

OnDemand is comprised of a few components. Each of which you can disable or limit access by simply changing the file permissions of the application.

All the applications OnDemand installs are located in /var/www/ood/apps/sys. So, for example, if you wished to disable the file browser you would simply change it’s directory to 700 so it’s unreadable by regular users.

When this directory is unreadable by regular users, the functionality it provides will be disabled.

sudo chmod 700 /var/www/ood/apps/sys/files

Alternatively, if you wished to limit access you can do so through group permissions. For example, if you wanted to limit access to the file browser to only members in the Unix group staff, you would simply apply the applicable file permission such that anonymous users cannot access the directory while members of the staff Unix group can.

sudo chmod 750 /var/www/ood/apps/sys/files
sudo chown root:staff /var/www/ood/apps/sys/files

Announcements

To add an announcement message that appears at the top of the dashboard you can create a file at /etc/ood/config/announcement.(md|yml) or /etc/ood/config/announcements.d/any_file_name.(md|yml).

On each request the dashboard will check for the existence of this file. If it exists, the contents will be converted using markdown converter to HTML and displayed inside a bootstrap alert.

For example, if I create an announcement.md file with the contents:

**NOTICE:** There will be a two day downtime on February 21-22, 2017. OSC
OnDemand will be unavailable during this period. For details, please visit
[http://bit.ly/2jhfyh7](http://bit.ly/2jhfyh7).

the user would see this message at the top of the dashboard:

Fig. 1 Example of the Dashboard announcement.

If the announcement file has the extension yml and is a yaml file it is first rendered using ERB and then the resulting file is parsed as YAML. The valid keys are:

Table 2 Config Files

type	warning, info, success, or danger	this is the Bootstrap alert style
msg	string containing markdown formatted message	if this is a blank string (only whitespace), the alert will not display

Because the announcement is rendered via ERB you can do some interesting things, like stop showing the announcement past a specified date:

type: warning
msg: |
  <% if Time.now < Time.new(2018, 9, 24, 12, 0, 0) %>
  A **Ruby Partial Downtime** for 4 hours on Monday, September 24 from 8:00am to 12:00pm
  will prevent SSH login to Ruby nodes and Ruby VDI sessions.
  <% end %>

Note

Warnings about the announcement file being missing may be present in users’ nginx logs. Despite the warning the Dashboard will still function normally without those files being present.

The file path for the announcement message can be customize using configuration properties, see OnDemand configuration documentation.

Message of the Day (MOTD)

You can configure the Dashboard to display the /etc/motd file on the front page - the same file that is displayed when ssh-ing to a login node.

To display a MOTD file on the Dashboard ensure that the environment variables $MOTD_PATH and $MOTD_FORMAT are set, where

MOTD_PATH="/etc/motd" # this supports both file and RSS feed URIs
MOTD_FORMAT="txt" # markdown, txt, rss, markdown_erb, txt_erb

Tip

The _erb formats support ERB rendering to generate more dynamic messages.

Warning

Some MOTD formats like rss, markdown and markdown_erb can contain malicious HTML content. For your safety, by default, the Open OnDemand system will not render HTML. We provide a configuration to enable HTML rendering in MOTD should you need to render HTML.

Fig. 2 Message of the Day appears in the body of the index page.

We recommend setting this in /etc/ood/config/apps/dashboard/env.

Branding

You can customize the logo, favicon, title, and navbar colors of OnDemand.

We recommend setting these values using the OnDemand configuration properties. Currently only the dashboard uses the colors in the navbar.

Table 3 Branding

Feature	Property	Details
Title	dashboard_title	The title appears in the navbar and is controlled by the property dashboard_title. The default value is “Open OnDemand”.
Logo	dashboard_logo	The default value for dashboard_logo is /public/logo.png and this should be the URL to the logo. By default if you place a logo.png at /var/www/ood/public/logo.png it will be accessible via the URL https://your.ondemand.institution.edu/public/logo.png. SVG logo format is also supported.
Logo height	dashboard_logo_height	The CSS height of the dashboard logo.
Favicon	public_url	The favicon is expected to exist at the path $public_url/favicon.ico. For a default OOD installation the favicon will be located at /var/www/ood/public/favicon.ico.
Brand background color	brand_bg_color	Controls the background color of the navbar in the dashboard
Brand foreground color	brand_link_active_bg_color	Controls the background color the active link in the navbar in the dashboard
Replace header title with logo	dashboard_header_img_logo	Value should be url to logo i.e. /public/logo.png. the background color the active link in the navbar in the dashboard
Use white text on black background for navbar.	navbar_type	By default we use inverse for this value, which specifies to use Bootstrap 3’s inverted navbar where text is white and background is black (or dark grey). You can set this to default to use black text on light grey background if it fits your branding better.

Note

It is possible to configure these settings using environment variables, although this is deprecated. For information about the properties and environment variables, see the OnDemand configuration documentation.

Fig. 3 Nav bar if I set brand_bg_color to #0000ff and brand_link_active_bg_color to #ff0000 and dashboard_title to OSC OnDemand

Custom CSS files

For more control on the look and feel of the dashboard pages, use custom CSS files. These CSS files will be added to all dashboard pages and loaded last to have precedence over default styles.

Add your CSS file references to the custom_css_files array property. Drop the files into the Apache public assets folder, the default location is: /var/www/ood/public. The system will prepend the /public URL path, based on the public_url property, to load the files correctly.

Example: to load the following CSS file: /var/www/ood/public/myfolder/custom-branding.css, add the configuration below. This will result in a CSS tag added to all dashboard pages with the path: /public/myfolder/custom-branding.css.

custom_css_files: ["/myfolder/custom-branding.css"]

Overriding Pages

Open OnDemand is built with Ruby on Rails which uses partials to build the web pages that are ultimately served to the clients.

All partials are held within dashboard’s views folder. These are the default partials that get distributed when you install the package.

Open OnDemand provides a facility to override any of these partial pages by supplying new files in /etc/ood/config/apps/dashboard/views.

Let’s look at an example where a center can provide a different, specialized, footer for the bottom of the page. Overriding the partial that has been distributed.

First, you would need to find the original partial that is being distributed.

We can find this file’s location at layouts/_footer.html.erb (relative to the dashboard’s views folder).

To override it, we simply provide a new file of the same name and path in the /etc/ood/config/apps/dashboard/views folder.

So, the full file path would be /etc/ood/config/apps/dashboard/views/layouts/_footer.html.erb. By providing a simple html file like the one below, placed in the location in the previous sentence, your center has now provided a different footer than the one distributed by the Open OnDemand package.

<div class="text-center h-5 my-3" >
  My center's custom footer.
<div>

Add URLs to Help Menu

These URLs can be specified, which will appear in the Help menu and on other locations of the Dashboard. We recommend setting this in /etc/ood/config/apps/dashboard/env.

Table 4 Dashboard URLs

Name	Environment variable	Example value
Support URL	OOD_DASHBOARD_SUPPORT_URL	https://www.osc.edu/contact/supercomputing_support
User Documentation	OOD_DASHBOARD_DOCS_URL	https://www.osc.edu/ondemand
Developer Documentation	OOD_DASHBOARD_DEV_DOCS_URL	https://osc.github.io/ood-documentation/master/app-development.html (link appears in Develop dropdown if developer mode enabled for user)
Change Password URL	OOD_DASHBOARD_PASSWD_URL	https://my.osc.edu
Custom Help URL (Also requires locale en.dashboard.nav_help_custom)	OOD_DASHBOARD_HELP_CUSTOM_URL	https://idp.osc.edu/auth/realms/osc/account/identity

Since OnDemand 2.1, custom links can be added to the Help menu using the configuration property help_menu. Links will be inserted at the end of the core links already included in the menu by the OnDemand codebase.

help_menu supports all the link definitions developed for the custom navigation configuration. For more information on how to create custom links, see for example adding urls to menus.

For information about how to configure properties, see the OnDemand configuration documentation.

help_menu:
  - group: "Documentation"
  - title: "Jupyter Docs"
    icon: "fas://book"
    url: "https://mydomain.com/path/jupyter"
  - title: "Support Docs"
    icon: "fas://book"
    url: "https://mydomain.com/path/support/docs"
  - group: "Custom Pages"
  - page: "rstudio_guide"
    title: "RStudio Guide"
    icon: "fas://window-restore"
  - group: "Profiles"
  - profile: "team1"
    title: "Team 1"
    icon: "fas://user"

Add Shortcuts to Files Menu

The Files menu by default has a single link to open the Files app in the user’s Home Directory. More links can be added to this menu, for Scratch space and Project space directories.

Adding more links currently requires adding a custom initializer to the Dashboard app. Ruby code is placed in the initializer to add one or more Ruby FavoritePath (or Pathname for backwards compatibility) objects to the OodFilesApp.candidate_favorite_paths array, a global attribute that is used in the Dashboard app.

FavoritePath is instantiated with a single String or Pathname argument, the directory path, and with an optional keyword argument title specifying a human readable title for that path.

Start by creating the file /etc/ood/config/apps/dashboard/initializers/ood.rb as such:

# /etc/ood/config/apps/dashboard/initializers/ood.rb

Rails.application.config.after_initialize do
  OodFilesApp.candidate_favorite_paths.tap do |paths|
    # add project space directories
    projects = User.new.groups.map(&:name).grep(/^P./)
    paths.concat projects.map { |p| FavoritePath.new("/fs/project/#{p}")  }

    # add User scratch space directory
    paths << FavoritePath.new("/fs/scratch/#{User.new.name}")

    # Project scratch is given an optional title field
    paths.concat projects.map { |p| FavoritePath.new("/fs/scratch/#{p}", title: "Scratch")  }
  end
end

• The variable paths is an array of FavoritePath objects that define a list of what will appear in the Dashboard menu for Files

• At OSC, the pattern for project paths follows /fs/project/project_name. So above we:

  1. get an array of all user’s groups by name

  2. filter that array for groups that start with P (i.e., PZS0002, PAW0003, …)

  3. using map we turn this array into an array of FavoritePath objects to all the possible project directories the user could have.

  4. extend the paths array with this list of paths

• For possible scratch space directories, we look for either /fs/scratch/project_name or /fs/scratch/user_name

• Additionally project scratch directories have a ‘title’ attribute and will with in the dropdown with both the title and the path.

The following example adds all directories within the specified base directories to the favorite paths. This approach is ideal when there is no specific directory naming logic to follow. It also appropriately handles Access Control Lists (ACLs). If a directory does not exist, no error is raised, making this configuration easily exportable to different clusters.

# /etc/ood/config/apps/dashboard/initializers/ood.rb

Rails.application.config.after_initialize do
  OodFilesApp.candidate_favorite_paths.tap do |paths|

    # Hash of base paths to check for additional directories with titles
    # location => Title
    base_paths = {
      '/home/share/' => 'Shared home',
      '/srv/scratch/shares/' => 'Shared scratch',
      '/srv/scratch/groups/' => 'Group scratch',
      '/srv/fast/users/' => 'Fast user'
      # Add more paths and titles here if needed
    }

    base_paths.each do |base_path, title|
      # Check if the base path exists and is a directory, to avoid error
      next unless Dir.exist?(base_path)

      # Get all entries in the current base path
      Dir.entries(base_path).each do |entry|
        # Construct the full path for the current entry
        full_path = File.join(base_path, entry)

        # Skip if it's not a directory or if it's a special entry like '.' or '..'
        next unless File.directory?(full_path) && !['.', '..'].include?(entry)

        # Check if the directory is readable and executable
        if File.readable?(full_path) && File.executable?(full_path)
          # Access the value of the current base_path using the `title` variable
          paths << FavoritePath.new(full_path, title: "#{title}: #{File.basename(full_path)}")
        end
      end
    end
  end
end

# The variable ``base_paths`` is an hash (``dirname`` => ``Title``) of all directories you want to parse. For the directory ``OSC_test`` in ``/srv/scratch/groups/``; the favorite path will be displayed as following

| Group scratch: OSC_test | /srv/scratch/groups/OSC_test |

On each request, the Dashboard will check for the existence of the directories
in ``OodFilesApp.candidate_favorite_paths`` array and whichever directories
exist and the user has access to will appear as links in the Files menu under
the Home Directory link.

Fig. 4 Shortcuts to scratch and project space directories in Files menu in OSC OnDemand.

• You must restart the Dashboard app to see a configuration change take effect. This can be forced from the Dashboard itself by selecting Help → Restart Web Server from the top right menu.

If you access the Dashboard, and it crashes, then you may have made a mistake in ood.rb file, whose code is run during the initialization of the Rails app.

Configuration Profiles

Note

The profile based configuration is an experimental feature. Not all properties have been migrated to be compatible. See the list of supported properties in the configuration documentation

Configuration properties can be organized in a hierarchy using profiles. With profiles, administrators can create different configuration settings within the same OnDemand installation. A profile can be pre-selected or dynamically changed while using the Dashboard application.

To define profile properties, we have to group them under a profile name within the profiles keyword. Multiple profiles can be created using different files, the configuration logic will aggregate all profiles into a single consolidated object.

profiles:
  profile_name:
    config_property: config_value

OnDemand uses an inheritance and override approach for profiles. The root profile is the default profile created by the system based on all the properties defined outside any profile definition. All other profiles will inherit these values.

Then, profile properties can override these values or define new ones as required.

The example below shows how the root profile defines a value for pinned_apps and pinned_apps_menu_length properties. The rstudio_group profile inherits the property value for pinned_apps_menu_length, and overrides the value for pinned_apps. As well, it defines a value for the property pinned_apps_group_by.

pinned_apps: [sys/*]
pinned_apps_menu_length: 10

profiles:
  rstudio_group:
    pinned_apps: [sys/rstudio]
    pinned_apps_group_by: "department"

Manual Profile Selection

The selection of a profile can be done manually by updating the user settings profile. By default the root profile is selected. Profile selection can be done using configurable navigation links. These links will update the profile, save the newly selected profile in the user settings file and reload the Dashboard.

To add profile links to the Help navigation dropdown menu use the configuration property profile_links. For more information on how to add profile links to the navigation bar in various places, see menus for profile links.

profile_links:
  - group: "Profiles"
  - profile: ""
    title: "Root Profile"
    icon: "fas://cog"
  - profile: rstudio_group
    title: "Rstudio Profile"
    icon: "fas://user"
  - profile: jupyter_group
    title: "Jupiter Profile"
    icon: "fas://user"

Tip

Use the group property to add a section header or to organize your profiles as shown above. Profile links can be configured as well using the Help menu customizations.

Note

Your profile selection is stored in your OnDemand user settings file. The profile key in this YAML file provides the value used to select your current profile. The user settings file is stored in your OnDemand data folder, this is usually ~/ondemand/data/sys/dashboard/.ood. Manual updates to this file will require an application restart to load the new values.

Automatic Profile Selection

• Request Hostname profile selection: use the current request hostname as the selected profile. To enable this feature, set the configuration property host_based_profiles to true. A request to https://www.ondemand.com/pun/sys/dashboard will use www.ondemand.com as the selected profile name.

  Configure the profiles using the hostname and the system will use the profile properties automatically.

profiles:
  www.ondemand.com:
    config_property: config_value

Tip

If you have a need to create multiple profile definitions that have the same configuration, you could use aliases. This is a feaure of YAML files. You can use YAML anchors and aliases to set the same profile configuration to more than one definition without duplication. This YAML feature only works when defined and used within the same file.

The example below creates 4 profiles all with the same configuration:

profiles:
  www.production.com: &production_profile # Anchor definition
    config_property: config_value
    config_property: config_value
    config_property: config_value

  www.local.com: *production_profile # Defining an alias to the previously set anchor.
  www.test.com: *production_profile
  www.staging.com: *production_profile

Changing the Navigation bar

There are a couple ways to change the navigation bar in Open OnDemand, some are simpler than others.

This section provides the outline of how the navigation bar is generated to begin with, then details the various ways to modify it.

Once you understand how the navigation bar is generated automatically, you can take steps to customize it as you see fit.

Understanding the default navigation bar

Some navigation menus and links are built-in to the system. The system will generate dropdown menus for Files, Jobs, Clusters and Interactive Apps automatically. It will also generate the link for My Interactive Sessions by default.

Here’s an image of you’d expect to see by default.

Open OnDemand is a platform for other applications, like Jupyter & RStudio. As such, the default navigation bar builds itself based on what applications it has discovered. The system will search /var/www/ood/apps/sys/ for these applications.

Every application should have Manifest yml files. The system reads these manifests files and builds additional dropdown menus (or adds to existing menus) based on the category field.

By default, the system will generate a new dropdown menu for every category it encounters. Within each dropdown menu it will add separators for each subcategory it encounters.

Limit auto generated menu bars

As described in the previous section, the system will generate new dropdown menus for every category it discovers.

If you wish to add or remove which categories create dropdown menus use the nav_categories configuration property.

Tip

Should you need more granular control over the navigation bar, read Fully customizing the navigation bar below.

Warning

Prior to 3.0, controlling which categories appear in the navigation bar was controlled by a Ruby initializer that you needed to modify. While the 2.x series will still support this scheme, Open OnDemand 3.0 will not. 3.0 will only support the nav_categories property.

Here is the 2.0 documentation for controlling the navbar.

Using manifests to create menu items

As described in Understanding the default navigation bar, the system automatically creates dropdown menus based on the applications it encounters.

So, with that knowledge, one can create or add to dropdown menus by creating applications with the correct information in their manifest.yml.

It’s fairly simple to make this application. Simply create the directory in the correct location and create a manifest.yml.

• sudo mkdir /var/www/ood/apps/sys/<NEW MENU ITEM>

• sudo vi /var/www/ood/apps/sys/<NEW MENU ITEM>/manifest.yml

  ---
  # This is the text that will show up in the dropdown menu.
  name: Add Menu Items to the navbar
  
  # This will create the 'Links' dropdown menu if it doesn't already exist.
  category: Links
  description: |-
    A description of what the menu item does.
  icon: fa://clock-o   # icon for the link.
  url: 'https://openondemand.org/'
  
  # open link in new browser window or same browser window.
  new_window: true
  

Tip

This scheme may be fine with one or two additional links. Should you need more granular control over the navigation bar, read Fully customizing the navigation bar below.

Fully customizing the navigation bar

Since 3.0, Open OnDemand provides a way to completely control the navigation bar through the nav_bar and help_bar ondemand.d/*.yml files configuration properties.

Warning

As described in Understanding the default navigation bar, the system auto-generates dropdown menus based on the applications it discovers. If the nav_bar or help_bar configurations are set, the system will only show what you’ve defined.

Before we look at how to modify it in detail, let’s look at what the default configuration would be (without showing any discovered apps).

# 'nav_bar' is the left side of the navigation bar.
nav_bar:
  # 'apps' dropdown menu is shown if you've set 'pinned_apps'.
  - apps
  - files
  - jobs
  - clusters
  - interactive apps
  - my interactive sessions

  # 'all apps' is disabled by default, but would be next if you set 'show_all_apps_link'.
  # - all apps

# 'help_bar' is the right side of the navigation bar.
help_bar:
  - develop
  - help
  - user
  - logout

The configuration above would be equivalent to the default navigation bar as described in Understanding the default navigation bar.

As menus are dynamically discovered from your system, this documentation can only cover how a fresh install - with no other applications - would behave.

A custom navigation definition is a list of navigation items. A navigation item could be a navigation menu or a navigation link. A navigation menu contains a list of navigation links with optional link groups.

There are several ways of creating a navigation menu.

Menus by Application category

One of the easiest ways to create menus is to create them based off of the applications categories.

The title of the dropdown menu will be the category itself, and menu items (applications) will be grouped by their subcategory. It is not possible to set an icon. The category matching is case insensitive.

Here’s an example using the interactive apps category. Just like the default navigation bar, this will generate a dropdown menu of all the applications the system has discovered in that category.

As you can see from the image, the system has discovered eight applications in two subcategories.

nav_bar:
  - "interactive apps"

Predefined templates

As you can see from the example default configuration in fully-customizing-the-navbar, there are several pre-defined navigation menus that you can use.

A complete list of predefined templates is:

• all_apps - The link to the all applications page.

• apps - A drop down menu of pinned_apps. Note that you need to set pinned_apps for this to show up.

• sessions - The link to “My Interactive Sessions” page.

• develop - The dropdown menu for developers, titled “Develop”.

• help - The “Help” dropdown menu.

• log_out - The link to logout, titled “Logout”.

• user - The “Logged in as <user>” text.

Here’s an example of defining all of them and what that would look like.

nav_bar:
  - "all_apps"
  - "apps"
  - "sessions"
  - "develop"
  - "help"
  - "log_out"
  - "user"

Menus based on applications

You can create dropdown menus based on applications the system can discover.

Menu items are automatically grouped based on the applications subcategory. Use the apps array to define the app tokens for this navigation menu.

The order of the menu items is based on the order you’ve defined.

nav_bar:
  - title: "My Apps"
    icon: "fas://window-restore"
    apps:
      - "sys/Rstudio/*"
      - "sys/bc_desktop"

Menus based on links

Menus based on links provide even more granular control on how the dropdown menu is generated.

As seen in the previous sections, using an apps array will automatically generate submenus based on the subcategory of the applications that have been discovered.

When using links, we can override this behaviour to provide different titles to the submenus, or with no submenus and subtitles at all.

Let’s look at this example using the same application tokens, but using links instead of apps. The system will discover and generate list items for the same eight applications, only without any submenus. It is simply a list of all the discovered applications with no further grouping.

nav_bar:
  - title: "My Apps"
    icon: "fa://code"
    links:
      - "sys/Rstudio/*"
      - "sys/bc_desktop"

To add submenus, simply use the group attribute.

When links are used with the group attribute, the discovered applications will now be grouped and submenu titles created based on the configuration provided.

This will look and feel similar to menus-based-on-applications with the exception being that submenus are defined by the group configuration instead of the subcategory of the applications in the list.

nav_bar:
  - title: "My Apps"
    icon: "fa://code"
    links:
      - group: "RStudio"
      - "sys/Rstudio/*"
      - group: "Remote"
      - "sys/bc_desktop"

Tip

You can also used predefined links (described above) in the links section here.

Menus for profile links

If you’ve enabled Profiles <profiles_guide> you can create navigation bar menus and links to those profiles through the profile attribute.

nav_bar:
  # Single top level link
  - title: "Title"
    icon: "fa://desktop" # optional, defaults to fas://cog
    profile: "team1"
    new_tab: true # optional, defaults to false

  # Dropdown menu
  - title: "Menu Item"
    links:
      - title: "Title"
        icon: "fa://desktop" # optional, defaults to fas://cog
        profile: "team1"
        new_tab: true # optional, defaults to false

Menus for custom pages

If you’ve enabled custom_pages_guide you can create navigation menus or single links directly to those pages through the page attribute.

nav_bar:
  # Single top level link
  - title: "Title"
    icon: "fa://desktop" # optional, defaults to fas://cog
    page: "documentation"
    new_tab: true # optional, defaults to false

  # Dropdown menu
  - title: "Menu Item"
    links:
      - title: "Title"
        icon: "fa://desktop" # optional, defaults to fas://cog
        page: "documentation"
        new_tab: true # optional, defaults to false

Menus for URLs

You can even create menu items for relative and absolute URLs to link anywhere through the url attribute.

nav_bar:
  # Single top level link
  - title: "Title"
    icon: "fa://desktop" # optional, defaults to fas://cog
    url: "/docs"
    new_tab: true # optional, defaults to false

  # Dropdown menu
  - title: "Menu Item"
    links:
      - title: "Title"
        icon: "fa://desktop" # optional, defaults to fas://cog
        url: "https://openondemand.org/"
        new_tab: true # optional, defaults to false

Interactive Apps Menu

To define a custom interactive apps menu, use the configuration property interactive_apps_menu. The custom menu will replace the Interactive Apps left hand side navigation in the Interactive Apps and My Interactive Sessions pages.

interactive_apps_menu property supports a single navigation item. How to configure navigation items is described in the Custom Dashboard Navbar section

interactive_apps_menu:
  title: "Custom Apps"
  links:
    - group: "Desktop"
    - apps: "sys/bc_desktop"
    - group: "Servers"
    - apps: "sys/Rstudio/*"

Disable uploads or downloads

By default, Open OnDemand will allow users to upload and download files. Both can be disabled through configuration.

Use download_enabled for disabling downloads and upload_enabled for disabling uploads.

Tip

Use File Access Controls (FACLs) on the ondemand.d files to enable or disable uploads or downloads based on group permissions.

Set Upload Limits

By default, the file size upload limit is 10737420000 bytes (~10.7 GB).

If you want set this to a lower value, set the FILE_UPLOAD_MAX configuration in the file apps’ configuration file /etc/ood/config/apps/dashboard/env.

If you want to set it to a higher value set nginx_file_upload_max in /etc/ood/config/nginx_stage.yml to the desired value. If you have FILE_UPLOAD_MAX set from above, unset it.

If the values differ, the files app will choose the smaller of the two as the maximum upload limit.

Warning

Both of these configurations are expected to be numbers only (no characters) and in units of bytes. The default value of 10737420000 bytes is ~10.7 GB or ~10.0 Gib.

Values like 1000M or 20G will not be accepted and may cause errors.

If you want to disable file upload altogether, set FILE_UPLOAD_MAX to 0 and leave the nginx_file_upload_max configuration alone (or comment it out so the default is used).

Set Download Limits

By default, the maximum file download size is 10.7 GB (10737418240 bytes). If you wish to change this, you can set the OOD_DOWNLOAD_DIR_MAX configuration environment variable in the /etc/ood/config/apps/dashboard/env file to the desired value in bytes.

For example, to set the limit to 5 GB, you can add the following line to the /etc/ood/config/apps/files/env file:

OOD_DOWNLOAD_DIR_MAX=5368709120

Note that this will limit the download size for all users of the Open OnDemand instance.

Warning

This configuration value is expected to be numbers only (no characters) and in units of bytes. The default value of 10737420000 bytes is ~10.7 GB or ~10.0 Gib.

Values like 1000M or 20G will not be accepted and may cause errors.

Block or Allow Directory Access

By default, all directories are open and accessible through Open OnDemand (barring POSIX file permissions. Open OnDemand can never read files the user cannot read).

By setting a colon delimited OOD_ALLOWLIST_PATH environment variable, the Job Composer, File Editor, and Files app respect the allowlist in the following manner:

1. Users will be prevented from navigating to, uploading, downloading, viewing, or editing files that are not an eventual child of the allowlisted paths

2. Users will be prevented from copying a template directory from an arbitrary path in the Job Composer if the arbitrary path that is not an eventual child of the allowlisted paths

3. Users should not be able to get around this using symlinks

We recommend setting this environment variable in /etc/ood/config/nginx_stage.yml as a YAML mapping (key value pairs) in the mapping (hash/dictionary) pun_custom_env i.e. below would a list that allows access to home directories, project space, and scratch space at OSC:

pun_custom_env:
 OOD_ALLOWLIST_PATH: "/users:/fs/project:/fs/scratch"

Warning

This allowlist is not enforced across every action a user can take in an app (including the developer views in the Dashboard). Also, it is enforced via the apps themselves, which is not as robust as using cgroups on the PUN.

Disabling Users

You can use the nginx stage configuration for disabling users to disable access to specific users based on the users’ default shell.

For example you could disable access to Open OnDemand for any user with the /usr/bin/false default shell.

Set Default SSH Host

Warning

The shell app does not work out of the box because all SSH hosts have to be explicitly allowed through the allowlist (see the section below).

Because there are no hosts configured, no hosts are allowed.

In /etc/ood/config/apps/shell/env set the env var OOD_DEFAULT_SSHHOST to change the default ssh host. Since 1.8, there is no out of the box default (in previous versions it was ‘localhost’, but this has been removed).

This will control what host the shell app ssh’s to when the URL accessed is /pun/sys/shell/ssh/default which is the URL other apps will use (unless there is context to specify the cluster to ssh to).

Since 1.8 you can also set the default ssh host in the cluster configuration as well. Simply add default=true attribute to the login section like the example below.

# /etc/ood/config/clusters.d/my_cluster.yml
---
v2:
  metadata:
    title: "My Cluster"
  login:
    host: "my_cluster.my_center.edu"
    default: true

Set SSH Allowlist

In 1.8 and above we stopped allowing ssh access by default. Now you have explicitly set what hosts users will be allowed to connect to in the shell application.

Every cluster configuration with v2.login.host that is not hidden (it has v2.metadata.hidden attribute set to true) will be added to this allowlist.

To add other hosts into the allow list (for example compute nodes) add the configuration OOD_SSHHOST_ALLOWLIST to the /etc/ood/config/apps/shell/env file.

This configuration is expected to be a colon (:) separated list of GLOBs.

Here’s an example of of this configuration with three such GLOBs that allow for shell access into any compute node in our three clusters.

# /etc/ood/config/apps/shell/env
OOD_SSHHOST_ALLOWLIST="r[0-1][0-9][0-9][0-9].ten.osc.edu:o[0-1][0-9][0-9][0-9].ten.osc.edu:p[0-1][0-9][0-9][0-9].ten.osc.edu"

Enable and configure Shell Ping Pong

Version 3.1 added the ability for the shell application to send and receive ping pong messages to keep the connection alive, and thus the terminal session alive.

The drawback to this is that these persistant connections can actually outlive your authentication timeout settings. Meaning users can have active shell sessions for much longer than your authentication systems would normally allow. This is because the connection was made while you were authenticated and it persists after your session has expired.

So, to keep a conservative security posture, Open OnDemand disables ping pongs by default letting apache timeout these connections more freely.

In addition to enabling or disabling ping pongs, there are other settings you may wish to change.

All of these configurations are environment variables are to be placed in /etc/ood/config/apps/shell/env.

Setting OOD_SHELL_PING_PONG to anything will enable ping pongs. Removing it or commenting it out will disable ping pongs (it’s disabled by default).

OOD_SHELL_INACTIVE_TIMEOUT_MS controls how long a connection can be inactive for (in milliseconds) before being closed. It defaults to 300000 milliseconds (5 minutes).

OOD_SHELL_MAX_DURATION_MS controls how long a connection can exist regardless of activity (in milliseconds). After this duration, the connection will be closed regardless of activity. It’s default is 3600000 milliseconds (1 hour).

# /etc/ood/config/apps/shell/env

OOD_SHELL_INACTIVE_TIMEOUT_MS=300000
OOD_SHELL_MAX_DURATION_MS=3600000
# OOD_SHELL_PING_PONG=false

Set OOD SSH Port

As of version 2.1 you are allowed to configure a non-standard ssh port.

To change the ssh port for submitting jobs in OOD, you need to add the configuration OOD_SSH_PORT to the /etc/ood/config/apps/dashboard/env file.

Here’s an example of of this configuration.

# /etc/ood/config/apps/dashboard/env
OOD_SSH_PORT="2222"

Shell App SSH Command Wrapper

Since OOD 1.7 you can use an ssh wrapper script in the shell application instead of just the ssh command.

This is helpful when you pass add additional environment variable through ssh (-o SendEnv=MY_ENV_VAR) or ensure some ssh command options be used.

To use your ssh wrapper configure OOD_SSH_WRAPPER=/usr/bin/changeme to point to your script in /etc/ood/config/apps/shell/env. Also be sure to make your script executable.

Here’s a simple example of what a wrapper script could look like.

#!/bin/bash

args="-o SendEnv=MY_ENV_VAR"

exec /usr/bin/ssh "$args" "$@"

Fix Unauthorized WebSocket Connection in Shell App

If you see a 401 error when attempting to launch a Shell app session, where the request URL starts with wss:// and the response header includes X-OOD-Failure-Reason: invalid origin, you may need to set the OOD_SHELL_ORIGIN_CHECK configuration option.

There is a security feature that adds proper CSRF protection using both the Origin request header check and a CSRF token check.

The Origin check uses X-Forwarded-Proto and X-Forwarded-Host that Apache mod_proxy sets to build the string that is used to compare with the Origin request header the browser sends in the WebSocket upgrade request.

In some edge cases this string may not be correct, and as a result valid WebSocket connections will be denied. In this case you can either set OOD_SHELL_ORIGIN_CHECK env var to the correct https string, or disable the origin check altogether by setting OOD_SHELL_ORIGIN_CHECK=off (or any other value that does not start with “http”) in the /etc/ood/config/apps/shell/env file.

Either way the CSRF token will still provide protection from this vulnerability.

# /etc/ood/config/apps/shell/env
# to disable it, just configure it with something that doesn't start with http
OOD_SHELL_ORIGIN_CHECK='off'

# to change it simply specify the http(s) origin you want to verify against.
OOD_SHELL_ORIGIN_CHECK='https://my.other.origin'

Custom Job Composer Templates

Below explains how job templates work for the Job Composer and how you can add your own. Here is an example of the templates we use at OSC for the various clusters we have

Job Templates Overview

“Job Composer” attempts to model a simple but common workflow. When creating a new batch job to run a simulation a user may:

1. copy the directory of a job they already ran or an example job

2. edit the files

3. submit a new job

“Job Composer” implements these steps by providing the user job template directories and the ability to make copies of them: (1) Copy a directory, (2) Edit the files, and (3) Submit a new job.

1. Copy a directory of a job already ran or an example job

   1. User can create a new job from a “default” template. A custom default template can be defined at /etc/ood/config/apps/myjobs/templates/default or under the app deployment directory at /var/www/ood/apps/sys/myjobs/templates/default. If no default template is specified, the default is /var/www/ood/apps/sys/myjobs/example_templates/torque

   2. user can select a directory to copy from a list of “System” templates the admin copied to /etc/ood/config/apps/myjobs/templates or under the app deployment directory at /var/www/ood/apps/sys/myjobs/templates during installation

   3. user can select a directory to copy from a list of “User” templates that the user has copied to $HOME/ondemand/data/sys/myjobs/templates

   4. user can select a job directory to copy that they already created through “Job Composer” from $HOME/ondemand/data/sys/myjobs/projects/default

2. Edit the files

   1. user can open the copied job directory in the File Explorer and edit files using the File Editor

3. Submit a new job

   1. user can use the Job Options form specify which host to submit to, what file is the job script

   2. user can use the web interface to submit the job to the batch system

   3. after the job is completed, the user can open the directory in the file explorer to view results

Job Template Details

A template consists of a folder and a manifest.yml file.

The folder contains files and scripts related to the job.

The manifest contains additional metadata about a job, such as a name, the default host, the submit script file name, and any notes about the template.

name: A Template Name
host: ruby
script: ruby.sh
notes: Notes about the template, such as content and function.

In the event that a job is created from a template that is missing from the manifest.yml, “Job Composer” will assign the following default values:

• name The name of the template folder.

• host The cluster id of the first cluster with a valid resource_mgr listed in the OOD cluster config

• script The first .sh file appearing in the template folder.

• notes The path to the location where a template manifest should be located.

Job Composer Script Size Limit

Since 1.7 the Job composer shows users ‘Suggested file(s)’ and ‘Other valid file(s)’. Other valid files are _any_ files less than OOD_MAX_SCRIPT_SIZE_KB which defaults to 65 (meaning 65kb).

To reconfigure this, simply set the environment variable in the job composers’ env file /etc/ood/config/apps/myjobs/env like so:

# show any file less than or equal to 15 kb
OOD_MAX_SCRIPT_SIZE_KB=15

Hiding Job Arrays

When composing a new job, the job arrays field is shown on supported clusters. To Hide this field even on supported clusters, an option was added.

To reconfigure this, simply set the environment variable in the job composers’ env file /etc/ood/config/apps/myjobs/env like so:

# Don't show job arrays field even on supported clusters
OOD_HIDE_JOB_ARRAYS=True

Custom Error Page for Missing Home Directory on Launch

Some sites have the home directory auto-create on first ssh login, for example via pam_mkhomedir.so. This introduces a problem if users first access the system through OnDemand, which expects the existence of a user’s home directory.

In OnDemand <= 1.3 if the user’s home directory was missing a non-helpful single string error would display. Now a friendly error page displays. This error page can be customized by adding a custom one to /etc/ood/config/pun/html/missing_home_directory.html.

The default error page looks like this:

An example of a custom error page has been provided at /opt/ood/nginx_stage/html/missing_home_directory.html.example.pam_mkhomedir and can be copied to /etc/ood/config/pun/html/missing_home_directory.html. This example directs the user to first click a link to open the shell app which will create the home directory. The shell app’s default host must be configured to be a host that is appropriate for this purpose. The custom error page looks like this:

See this Discourse discussion for details.

Pinning Applications to the Dashboard

In version 2.0 you can now pin app Icons to the dashboard that link to the application form.

When configured a widget like the one below will appear on the dashboard’s landing page.

The configuration for what apps to pin allows for three variants.

You can configure specific apps with a string of the type router/app_name. For example sys/jupyter is the system installed app named jupyter.

Secondly you can configure globs like sys/* to pin all system installed apps. Or Maybe sys/minimal_* to pin all system installed apps that begin with ‘minimal’.

Lastly you can choose to pin apps based off of fields in their manifest.yml file. You can match by type, category, subcategory and metadata fields. These matches are cumulative. Meaning an app has to match all of these to be pinned. In the examples below there is a configuration of type sys and category minimal. This configuration will only pin system installed apps that are in the minimal category. An app has to meet both these criteria to be pinned to the dashboard.

Full examples are below:

# /etc/ood/config/ondemand.d/ondemand.yml
pinned_apps:
  - sys/jupyter           # pin a specific system installed app called 'jupyter'

  - sys/bc_desktop/desk1  # pinned desktop app must contain exact desktop name - 'desk1'

  - 'sys/*'               # pin all system install apps. This also works for usr/* and dev/*

  - category: 'minimal'   # pin all the apps in the 'minimal' category

  - type: sys             # pin all system installed apps in the minimal category.
    category: 'minimal'

  # pin all system installed apps in the minimal category and the
  # class instruction subcategory
  - type: sys
    category: 'minimal'
    subcategory: 'class_instruction'

  # pin all system installed apps in the minimal category, the
  # class instruction subcategory and the metadata field 'field_of_science'
  # with an exact match on biology
  - type: sys
    category: 'minimal'
    subcategory: 'class_instruction'
    field_of_science: 'biology'

  # pin any app with an exact match on the metadata field_of_science of biology
  - field_of_science: 'biology'

  # pin any app with a glob match *bio* on the metadata field_of_science
  - field_of_science: '*bio*'

Administrators can also configure the pinned apps to be grouped by any field in the manifest.yml including metadata fields with the pinned_apps_group_by configuration.

This will create a row and a heading for each group like so (the image was generated from grouping by category):

One can also change the menu length in the ‘App’s menu item. If you’ve pinned more than 6 apps and you want to them to show up in this dropdown list, simply increase the length with the option below.

# /etc/ood/config/ondemand.d/ondemand.yml
pinned_apps_menu_length: 6        # the default number of items in the dropdown menu list
pinned_apps_group_by: category    # defaults to nil, no grouping

Pinned Apps customizations

To customize the text, icon, or color of the pinned app tile, use the tile configuration property in the application manifest or form. The form values will take precedence over any set in the manifest. All the values are optional and any set will override the default from the application.

tile:
  title: "Custom Title"
  icon: fa://desktop
  border_color: "red"
  sub_caption: |
    Custom Text Line 1
    Text Line 2
    Text Line 3

The CSS for the pinned app tiles has been optimized to support upto three lines of text for the sub_caption property.

Custom layouts in the dashboard

Administrators can now customize what widgets appear on the dashboard and how they’re laid out on the page.

In it’s simplest form this feature allows for a rearrangement of existing widgets. As of 2.1 the existing widgets are:

• pinned_apps - Pinned Apps described above

• recently_used_apps - the four most recently used interactive applications. Launching these applications will start a new interactive session with the previously submitted parameters.

• sessions - the three most recent active interactive sessions

• motd - the Message of the Day

• xdmod_widget_job_efficiency - the XDMoD widget for job efficiency

• xdmod_widget_jobs - the XDMoD widget for job information

This feature also allows for administrators to add custom widgets. Simply drop new files into /etc/ood/config/apps/dashboard/views/widgets and reference them in the configuration. These partial files can be any format Rails recognizes, notably .html or .html.erb extensions.

Also if you use subdirectories under widgets, they can be referenced by relative paths. For example views/widgets/cluster/_my_cluster_widget.html.erb would be referenced in the configuration as cluster/my_cluster_widget.

Warning

Rails expects files to be prefixed with an underscore. For example if you configured my_new_widget the filename should be _my_new_widget.html.

Without setting this configuration, the dashboard will arrange itself depending on what features are enabled. For example if both pinned apps and XDMoD features are enabled it will arrange itself accordingly based on a default layout.

Here’s the default configuration when all of these features are enabled.

# /etc/ood/config/ondemand.d/ondemand.yml
dashboard_layout:
  rows:
    - columns:
      - width: 8
        widgets:
          - pinned_apps
          - motd
      - width: 4
        widgets:
          - xdmod_widget_job_efficiency
          - xdmod_widget_jobs

rows are an array of row elements. Each row element has a columns field which is an array column elements. Each column element two fields. A width field that specifies the width in the bootstrap grid layout which defaults to 12 columns in total. It also has a widgets field which is an array of existing or newly added widgets to render in that column.

Customize Text in OnDemand

Using Rails support for Internationalization (i18n), we have internationalized many strings in the Dashboard and the Job Composer apps.

Initial translation dictionary files with defaults that work well for OSC and using the English locale (en) have been added (/var/www/ood/apps/sys/dashboard/config/locales/en.yml and /var/www/ood/apps/sys/myjobs/config/locales/en.yml). Sites wishing to modify these strings in order to provide site specific replacements for English, or use a different locale altogether, should do the following:

1. Copy the translation dictionary file (or create a new file with the same structure of the keys you want to modify) to /etc/ood/config/locales/en.yml and modify that copy.

2. If you want apps to look for these dictionary files in a different location than /etc/ood/config/locales/en.yml you can change the location by defining OOD_LOCALES_ROOT environment variable.

3. The default locale is “en”. You can use a custom locale. For example, if you want the locale to be French, you can create a /etc/ood/config/locales/fr.yml and then configure the Dashboard to use this locale by setting the environment variable OOD_LOCALE=fr where the locale is just the name of the file without the extension. Do this in either the nginx_stage config or in the Dashboard and Job Composer env config file.

In each default translation dictionary file the values that are most site-specific (and thus relevant for change) appear at the top.

Table 5 OnDemand Locale Files

File path	App	Translation namespace
/var/www/ood/apps/sys/dashboard/config/locales/en.yml	Dashboard	dashboard
/var/www/ood/apps/sys/myjobs/config/locales/en.yml	Job Composer	jobcomposer
/etc/ood/config/locales/en.yml	All localizable apps will check this path, unless OOD_LOCALES_ROOT is set.	Any

Warning

Translations have certain variables passed to them for example %{support_url}. Those variables may be used or removed from the translation. Attempting to use a variable that is not available to the translation will crash the application.

Note

Localization files are YAML documents; remember that YAML uses spaces for indentation NOT tabs per the YAML spec.

Note

OnDemand uses the convention that translations that accept HTML with be suffixed with _html. Any other translation will be displayed as plain text.

Change the Dashboard Tagline

en:
  dashboard:
    welcome_html: |
      %{logo_img_tag}
      <p class="lead">OnDemand provides an integrated, single access point for all of your HPC resources.</p>
    motd_title: "Message of the Day"

The welcome_html interpolates the variable logo_img_tag with the default logo, or the logo specified by the environment variable OOD_DASHBOARD_LOGO.

You may omit this variable in the value you specify for welcome_html if you prefer.

Change quota messages in the Dashboard

Two messages related to file system usage that sites may want to change:

• quota_additional_message - gives the user advice on what to do if they see a quota warning

• quota_reload_message - tells the user that they should reload the page to see their quota usage change, and by default also tells users that the quota values are updated every 5 minutes

Customize Text in the Job Composer’s options form

The OSC-default value for options_account_help says that the account field is optional unless a user is a member of multiple projects.

Items of note include what to call Accounts which might also be Charge Codes, or Projects. At OSC entering an account is optional unless a user is a member of multiple projects which is reflected in the default value for the string options_account_help.

Disk Quota Warnings on Dashboard

You can display warnings to users on the Dashboard if their disk quota is nearing its limit. This requires an auto-updated (it is recommended to update this file every 5 minutes with a cronjob) JSON file that lists all user quotas. The JSON schema for version 1 is given as:

{
  "version": 1,
  "timestamp": 1525361263,
  "quotas": [
    {},
    {}
  ]
}

Where version defines the version of the JSON schema used, timestamp defines when this file was generated, and quotas is a list of quota objects (see below).

You can configure the Dashboard to use this JSON file (or files) by setting the environment variable OOD_QUOTA_PATH as a colon-delimited list of all JSON file paths in the /etc/ood/config/apps/dashboard/env file. In addition to pointing to files OOD_QUOTA_PATH may also contain HTTP(s) or FTP protocol URLs. Colons used in URLs are correctly handled and are not treated as delimiters.

Warning

Sites using HTTP(s) or FTP for their quota files may see slower dashboard load times, depending on the responsiveness of the server providing the quota file(s).

The default threshold for displaying the warning is at 95% (0.95), but this can be changed with the environment variable OOD_QUOTA_THRESHOLD.

An example is given as:

# /etc/ood/config/apps/dashboard/env

OOD_QUOTA_PATH="/path/to/quota1.json:https://example.com/quota2.json"
OOD_QUOTA_THRESHOLD="0.80"

Individual User Quota

If the quota is defined as a user quota, then it applies to only disk resources used by the user alone. This is the default type of quota object and is given in the following format:

{
  "type": "user",
  "block_limit": 5000000,
  "file_limit": 1000000,
  "path": "/path/to/volume2",
  "total_block_usage": 400000,
  "total_file_usage": 1000,
  "user": "user1"
}

Warning

A block must be equal to 1 KiB for proper conversions.

Individual Fileset Quota

If the quota is defined as a fileset quota, then it applies to all disk resources used underneath a given volume. This requires the object to be repeated for each user that uses disk resources under this given volume. The format is given as:

{
  "type": "fileset",
  "user": "user1",
  "path": "/path/to/volume2",
  "block_usage": 500,
  "total_block_usage": 1000,
  "block_limit": 2000,
  "file_usage": 1,
  "total_file_usage": 5,
  "file_limit": 10
}

Where block_usage and file_usage are the disk resource usages attributed to the specified user only.

Note

For each user with resources under this fileset, the above object will be repeated with just user, block_usage, and file_usage changing.

Balance Warnings on Dashboard

You can display warnings to users on the Dashboard if their resource balance is nearing its limit. This requires an auto-updated (it is recommended to update this file daily with a cronjob) JSON file that lists all user balances. The JSON schema for version 1 is given as:

{
  "version": 1,
  "timestamp": 1525361263,
  "config": {
    "unit": "RU",
    "project_type": "project"
  },
  "balances": [
    {},
    {}
  ]
}

Where version defines the version of the JSON schema used, timestamp defines when this file was generated, and balances is a list of quota objects (see below).

The value for config.unit defines the type of units for balances and config.project_type would be project, account, or group, etc. Both values are used in locales and can be any string value.

You can configure the Dashboard to use this JSON file (or files) by setting the environment variable OOD_BALANCE_PATH as a colon-delimited list of all JSON file paths.

Warning

Sites using HTTP(s) or FTP for their balance files may see slower dashboard load times, depending on the responsiveness of the server providing the quota file(s).

The default threshold for displaying the warning is at 0, but this can be changed with the environment variable OOD_BALANCE_THRESHOLD.

An example is given as:

# /etc/ood/config/apps/dashboard/env

OOD_BALANCE_PATH="/path/to/balance1.json:/path/to/balance2.json"
OOD_BALANCE_THRESHOLD=1000

User Balance

If the balance is defined as a user balance, then it applies to only that user. Omit the project key:

{
  "user": "user1",
  "value": 10
}

Project Balance

If the balance is defined as a project balance, then it applies to a project/account/group, whatever is defined for config.project_type:

{
  "user": "user1",
  "project": "project1",
  "value": 10
}

Maintenance Mode

As an administrator you may want to have some downtime of the Open OnDemand service for various reasons, while still telling your customers that the downtime is expected.

You can do this by setting Open OnDemand in ‘Maintenance Mode’. While Maintenance mode is active, Apache will not serve requests for paths outside the /public/maintenance/* wildcard. Instead, it will serve the /var/www/ood/public/maintenance/index.html file, which you can change or brand to be your own. Changes to this file will persist through upgrades. Any assets (e.g., images, stylesheets, or javascript) needed by the HTML file should be placed in the /var/www/ood/public/maintenance/ directory. You can also put symbolic links into the /var/www/ood/public/maintenance/ directory, if you want to reuse assets located elsewhere in your file system.

While in maintenance mode, Apache returns the HTML file and a 503 response code to all users whose IP does not match one of the configured allowlist regular expressions. The allowlist is to allow staff, localhost or a subset of your users access while restricting others.

In this example we allow access to anyone from 192.168.1..* which is the 192.168.1.0/24 CIDR and the single IP ‘10.0.0.1’.

These are the settings you’ll need for this functionality.

# /etc/ood/config/ood_portal.yml
use_rewrites: true
use_maintenance: true
maintenance_ip_allowlist:
  # examples only! Your ip regular expressions will be specific to your site.
  - '192.168.1..*'
  - '10.0.0.1'

To start maintenance mode (and thus start serving this page) simply touch /etc/ood/maintenance.enable to create the necessary file. When your downtime is complete just remove the file and all the traffic will be served normally again. The existence of this file is what starts or stops maintenance mode, not it’s content, so you will not need to restart apache or modify it’s config files for this to take affect.

Grafana support

It’s possible to display Grafana graphs within the ActiveJobs app when a user expands a given job.

Grafana must be configured to support embedded panels and at this time it is also required to have an anonymous organization. Below are configuration options are needed to support displaying Grafana panels in ActiveJobs. Adjust org_name to match whatever organization you wish to be anonymous.

Warning

Changing a Grafana install to support anonymous access can cause unintended consequences for how authenticated users interact with Grafana. It’s recommended to test anonymous access on a non-production Grafana install if you do not already support anonymous access.

[auth.anonymous]
enabled = true
org_name = Public
org_role = Viewer

[security]
allow_embedding = true

The dashboard used by OSC is the OnDemand Clusters dashboard.

Settings used to access Grafana are configured in the cluster config. The following is an example from OSC:

custom:
  grafana:
    host: "https://grafana.osc.edu"
    orgId: 3
    dashboard:
      name: "ondemand-clusters"
      uid: "aaba6Ahbauquag"
      panels:
        cpu: 20
        memory: 24
    labels:
      cluster: "cluster"
      host: "host"
      jobid: "jobid"
    cluster_override: "mysite"

When viewing a dashboard in Grafana choose the panel you’d wish to display and select Share. Then choose the Embed tab which will provide you with the iframe URL that will need to be generated within OnDemand. The time ranges and values for labels (eg: var-cluster=) will be autofilled by OnDemand.

• orgId is the orgId query parameter

• The dashboard name is the last segment of the URI before query parameters

• The uid is the UID portion of URL that is unique to every dashboard

• The panelId query parameter will be used as the value for either cpu or memory depending on the panel you have selected

• The values for labels are how OnDemand maps labels in Grafana to values expected in OnDemand. The jobid key is optional, the others are required.

• The cluster_override can override the cluster name used to make requests to Grafana if the Grafana cluster name varies from OnDemand cluster name.

Disable Host Link in Batch Connect Session Card

Batch connect session cards like this have links to the compute node on which the job is currently running (highlighted).

However, some sites may want to disable this feature because they do not allow ssh sessions on the compute nodes.

To disable this, simply set the environment variable in the dashboards’ env file /etc/ood/config/apps/dashboard/env to a falsy value (0, false, off).

# don't show ssh link in batch connect card
OOD_BC_SSH_TO_COMPUTE_NODE=off

If you wish to disable on a per-cluster basis, you can set the following in your cluster YAML configuration.

v2:
   # ...
   batch_connect:
     ssh_allow: false

Set Illegal Job Name Characters

If you encounter an issue in running batch connect applications complaining about invalid job names like the error below.

Unable to read script file because of error: ERROR! argument to -N option must not contain /

To resolve this set OOD_JOB_NAME_ILLEGAL_CHARS to / for all OOD applications in the pun_custom_env attribute of the /etc/ood/config/nginx_stage.yml file.

# /etc/ood/config/nginx_stage.yml
pun_custom_env:
  OOD_JOB_NAME_ILLEGAL_CHARS: "/"

Customize Dex Theme

It’s possible to use a customized theme when authenticating with Dex when using OnDemand’s default authentication. Refer to the upstream Dex template docs for additional information on templating Dex.

The simplest approach is to copy the OnDemand theme and make changes. This is idea if you wish to make the following changes:

• Change navigation or login page logos

• Change favicon

• Change CSS styles

cp -r /usr/share/ondemand-dex/web/themes/ondemand /usr/share/ondemand-dex/web/themes/mycenter

To update the theme you must modify /etc/ood/config/ood_portal.yml and regenerate the Dex configuration:

dex:
# ...
  frontend:
    theme: mycenter

The default ondemand theme can also be configured using the following configuration keys within /etc/ood/config/ood_portal.yml:

dex:
# ...
  frontend:
    issuer: "MyCenter OnDemand"
    extra:
      navLogo: "/public/nav-logo.png"
      loginLogo: "/public/logo.png"
      loginTitle: "Log in with your Center username and password"
      loginButtonText: "Log in with your Center account"
      usernamePlaceholder: "center-username"
      passwordPlaceholder: "center-password"
      loginAlertMessage: "Login services will be down during center maintenance between 8:00 AM EST and 10:00 AM EST"
      loginAlertType: "warning"

Changes are applied by running update_ood_portal and restarting the ondemand-dex service.

sudo /opt/ood/ood-portal-generator/sbin/update_ood_portal
sudo systemctl restart ondemand-dex.service

XDMoD Integration

XDMoD Integration requires XDMoD 9+, OnDemand 1.8+, and the ability to facilitate single sign on between the two services. Currently this has been demonstrated to work using OpenID Connect via Keycloak as well as a modified instance of Dex Identity Provider to support sessions.

Fig. 5 Example of XDMoD Job Efficiency reports in the OnDemand Dashboard.

Steps to enable the XDMoD reports in the OnDemand Dashboard:

1. Configure OnDemand with XDMoD host URL in PUN /etc/ood/config/nginx_stage.yml

   pun_custom_env:
     OOD_XDMOD_HOST: "https://xdmod.osc.edu"
   

2. Add OnDemand host as domain to XDMoD portal settings for CORS /etc/xdmod/portal_settings.ini

   domains = "https://ondemand.osc.edu"
   

3. Configure identity provider to include OnDemand host in HTTP Content-Security-Policy for frame-ancestors since OnDemand uses iFrames to trigger SSO with XDMoD when a user logs in. Below is what we ensured Content-Security-Policy header for frame-ancestors was set to when configuring Keycloak:

   frame-ancestors https://*.osc.edu 'self'
   

4. If you want the XDMoD links in the OnDemand Job Composer you also need to configure OnDemand with XDMoD resource id in each cluster config. For example, in the hpctoolset the resource_id for the hpc cluster is 1 in XDMoD, so we modify /etc/ood/config/clusters.d/hpc.yml to add a xdmod map to the custom map at the bottom of the file:

   v2:
    metadata:
      title: "HPC Cluster"
    login:
      host: "frontend"
    job:
      adapter: "slurm"
      cluster: "hpc"
      bin: "/usr/bin"
    custom:
      xdmod:
        resource_id: 1
   

5. In the Job Composer, Open XDMoD job links will include a warning message that the job may not appear in XDMoD for up to 24 hours after the job completed. The message is to address the gap of time between the job appearing as completed in the Job Composer and the job appearing in Open XDMoD after the ingest and aggregation script is run. This message appears from the time the Job Composer becomes aware of the job completion status, till an elapsed time specified in seconds by the locale key en.jobcomposer.xdmod_url_warning_message_seconds_after_job_completion which defaults to 24 hours (86400 seconds) with a text message specified by locale key en.jobcomposer.xdmod_url_warning_message. To disable this message, set the value you your locale file under /etc/ood/config/locales. For example, in the default locale we have these values:

   en:
     jobcomposer:
       xdmod_url_warning_message: "This job may not appear in Open XDMoD until 24 hours after the completion of the job."
       xdmod_url_warning_message_seconds_after_job_completion: 86400
   

   Which results in these warning messages appearing in Job Composer:

   
   

Accessing Remote File Systems

Since 2.1 you can use rclone to interact with remote file systems. Since every command in Open OnDemand is issued as the user, the user themselves are required to setup their rclone remotes.

You can refer to the OSC’s rclone documentation on how to configure rclone remotes.

To enable this feature ensure that rclone is installed on the same machine that Open OnDemand is installed. You also have to enable the feature through the configuration entry for enabling remote filesystems.

Cancel Interactive Sessions

We can now cancel an interactive session from the session panel without deleting the session card. This functionality will allow users to remove the job from the scheduler and keep the information in the OnDemand interface.

This feature is disabled behind a feature toggle. To enable it, set the configuration property cancel_session_enabled: true. For more information on how to configure properties, see configuration documentation.

When enabled, the cancel button will appear for active sessions. When the session is cancelled, the job will be cancelled in the scheduler, the status will change to completed, and the session card will be kept. For completed sessions, the system will only show the delete button.

Custom Pages

Custom pages allow administrators to add custom content to new dashboard pages. These new pages are configured using layouts and widgets, in the same way as customizing the layout for the dashboard.

To create a custom page, add a layout under a new page_code to the custom_pages property object. For more information on how to setup dashboard properties, see OnDemand configuration files

Custom pages have their own URL based on their page_code: /pun/sys/dashboard/custom/page_code.

The example configuration below creates a custom page with the page_code: documentation. It will render a layout with the pinned_apps widget under the URL: /pun/sys/dashboard/custom/documentation.

custom_pages:
  documentation:
    rows:
      - columns:
          - width: 12
            widgets:
              - "pinned_apps"

Links to the custom pages can be added the Help dropdown menu. To add links to the Help menu use the configuration property help_menu. See the documentation on adding urls to the Help menu for details and examples.

Adding custom pages links uses the same notation and attributes as when created for the custom Dashboard navbar. See How to add menus for custom pages.

# Adding a link to the custom page with page_code = "documentation"
help_menu:
  - group: "Custom Pages"
  - page: "documentation"
    title: "Site Documentation"
    icon: "fas://book"

Support Tickets

The Dashboard now supports sending a support ticket to your institution Help Desk system. The feature uses email as the delivery mechanism, but it could be extended to support others.

To enable this feature, define the settings needed using the configuration property support_ticket. Once this configuration object is defined, the Submit Support Ticket link will be shown in the Help navigation menu and in all interactive session cards.

The support ticket page has a simple form to gather information that will be submitted to the support system via email. If triggered from a session card, the system will automatically add information about the selected session to the body of the email to help troubleshoot the issue.

A brief description of the default form fields used in the support ticket form:

• Username: Logged in user. Username will be added to the support ticket body for reference.

• Email: Email address to communicate regarding this support ticket. A single email address is supported.

• CC: Additional email address to communicate regarding this ticket. A single email address is supported.

• Subject: Brief description of the problem.

• Attachments: Add screenshots of the problem to help with debugging and troubleshooting.

• Description: Detail description of the problem.

Configuration

These are the most common configuration properties needed to enable and setup the support ticket feature:

• description: Text to customize the support ticket header.

• email: Section to configure how the email is sent to the support system.

• to: The destination email address of your Help Desk.

• from: The address to set in the from field when sending the email. It defaults to the email submitted in the support ticket form. This is useful to prevent the incoming emails being considered spam.

• delivery_method: Rails setting to set the transport mechanism to use. This is usually smtp. For more information see the Rails documentation on mailers.

• delivery_settings: Rails settings object to set the transport configuration properties. See example below or the Rails documentation on mailers.

Warning

Use caution when supplying username and password in delivery_settings. These files are readable by unprivileged users and as such this information can be found by a sophisticated user without privilege escalation.

Sample configuration:

support_ticket:
  # Optional.
  # Validation configuration for attachments.
  attachments:
    # Maximum number of attachments. Defaults to 4
    max_items: 1
    # Maximum size for a single attachment in bytes. Defaults to 6MB
    # Common file sizes:
    #  2MB = 2097152
    #  5MB = 5242880
    #  6MB = 6291456
    #  10MB = 10485760
    max_size: 2097152
  # Optional.
  # Text added to the page under the support ticket header
  description: |
    My optional description Text for the support ticket feature

  # email section is required and should always be present.
  # It configures how the support ticket email is sent
  email:
    # Required.
    # Your support system email address. The email will be sent to this address
    to: "support@support.system.com"
    # Optional.
    # To set the email from field. Defaults to the email set in the form.
    # The email set in the form will always be added to the reply-to email field
    from: "config@example.com"

    # delivery_method and delivery_settings are Rails configuration items
    # that can be set in this file to simplify configuration.
    # If you prefer, you can configure Rails in the usual way.
    delivery_method: "smtp"
    delivery_settings:
      address: 'smtp.gmail.com'
      port: 587
      domain: 'example.com'
      user_name: '<username>'
      password: '<password>'
      authentication: 'plain'
      enable_starttls_auto: true
      open_timeout: 15
      read_timeout: 15

Customizations

The support ticket form can be customized using the form and attributes configuration properties. In the same way that you can configure the form for interactive applications, the support ticket form fields can be arranged or changed as required.

Note

Please note that the email field must be present in the form for the support ticket feature to be functional.

Custom fields can be added, but they will require a custom email template to make use of the provided values in the email body. Override the default email template with your own by dropping a file named _email.text.erb into the folder /etc/ood/config/apps/dashboard/views/support_ticket/email/

This is the default form for submitting support tickets. You can use this YAML as a starting place for removing and/or adding fields.

support_ticket:
  email: must supplied by you

  attributes:
    username:
      value: "<%= CurrentUser.name %>"
      readonly: true
    email:
      widget: email_field
      required: true
    cc:
      widget: email_field
    subject:
      required: true
    session_id:
      widget: hidden_field
    session_description:
      hide_when_empty: true
      disabled: true
    attachments:
      widget: file_attachments
    description:
      widget: text_area
      required: true
      rows: 10
    queue:
      widget: hidden_field

  form:
    - username
    - email
    - cc
    - subject
    - session_id
    - session_description
    - attachments
    - description
    - queue

The example below shows a custom form configuration with 3 fields and how to use them in the template to generate the email body.

support_ticket:
  # email section is required and should always be present.
  # It configures how the support ticket email is sent
  email:
    to: "support@support.system.com"

  attributes:
    email:
      required: true
    subject:
      value: "OnDemand Problem: "
  form:
    - email
    - subject
    - department

# /etc/ood/config/apps/dashboard/views/support_ticket/email/_email.text.erb
Email Intro
Department: <%= @context.support_ticket.department %>
Subject Copy: <%= @context.support_ticket.subject %>

Other static data.